Motif View

Internal ID 17810810
Source Database TransTermHP TERM 388
Feature Type terminator
Name
Rho-independent transcription terminator TERM 388
Sequence GGGCGGTTTCCACCGCCC
Look for more occurrences
Start 1732833
End 1732850
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa CF614 genomic scaffold adggb-supercont1.2, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GACGGGCATGAAAAA(5' tail) GGGCGGT(5' stem) GGAA(loop) ACCGCCC(3' stem) TTTTTTCGCCAGCCG(3' tail). Confidence: 100. opp_overlap 1732833

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685