Motif View

Internal ID 17810259
Source Database TransTermHP TERM 211
Feature Type terminator
Name
Rho-independent transcription terminator TERM 211
Sequence GAGGCCACCCTTGGGTGGCCTC
Look for more occurrences
Start 901978
End 901999
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa CF614 genomic scaffold adggb-supercont1.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCGCGGCGGAACGAA(5' tail) GAGGCCACC(5' stem) CTTG(loop) GGTGGCCTC(3' stem) TTTCATGGCGGGATG(3' tail). Confidence: 90. opp_overlap 901978

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685