Motif View

Internal ID 17804730
Source Database TransTermHP TERM 2
Feature Type terminator
Name
Rho-independent transcription terminator TERM 2
Sequence CCCCGGCAGCAATGCCGGGG
Look for more occurrences
Start 1484
End 1503
Strand -
Genomic Context
Replicon Pseudomonas thermotolerans J53 PsesuJ47DRAFT_scaffold_25.26_C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGGGAAAAAGAAAA(5' tail) CCCCGGCA(5' stem) TTGC(loop) TGCCGGGG(3' stem) CTCTCCAACGACACC(3' tail). Confidence: 100. overlap 1479

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685