Motif View

Internal ID 17803725
Source Database TransTermHP TERM 64
Feature Type terminator
Name
Rho-independent transcription terminator TERM 64
Sequence GCCCGGGCGAGATTCGCTCGGGC
Look for more occurrences
Start 340463
End 340485
Strand -
Genomic Context
Replicon Pseudomonas sp. URIL14HWK12:I6 H043DRAFT_scaffold00005.5_C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCGAGGCGAAAAAAA(5' tail) GCCCGAGCGA(5' stem) ATC(loop) TCGCCCGGGC(3' stem) TTTTTCAATGGGCGG(3' tail). Confidence: 100. opp_overlap 340463

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685