Motif View

Internal ID 17798329
Source Database TransTermHP TERM 24
Feature Type terminator
Name
Rho-independent transcription terminator TERM 24
Sequence CCCGCCTCGGCGGG
Look for more occurrences
Start 59815
End 59828
Strand +
Genomic Context
Replicon Pseudomonas sp. LAIL14HWK12:I12 D902DRAFT_scaffold00009.9, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGCTTCAGAAAAAA(5' tail) CCCGC(5' stem) CTCG(loop) GCGGG(3' stem) TTTTTTTTGTGCCCA(3' tail). Confidence: 100. opp_overlap 59815

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685