Motif View

Internal ID 17797152
Source Database TransTermHP TERM 74
Feature Type terminator
Name
Rho-independent transcription terminator TERM 74
Sequence CGAGGGCTTTGCCCTCG
Look for more occurrences
Start 217007
End 217023
Strand -
Genomic Context
Replicon Pseudomonas sp. LAMO17WK12:I4 D885DRAFT_scaffold00010.10_C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCTTGCCGGCGAAA(5' tail) CGAGGGC(5' stem) AAA(loop) GCCCTCG(3' stem) CCTGCGGGCTTGGAT(3' tail). Confidence: 95. opp_overlap 216997, overlap 217017

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685