Motif View

Internal ID 17791629
Source Database TransTermHP TERM 996
Feature Type terminator
Name
Rho-independent transcription terminator TERM 996
Sequence CCATCTCATGG
Look for more occurrences
Start 4200441
End 4200451
Strand +
Genomic Context
Replicon Pseudomonas chlororaphis subsp. aureofaciens 30-84 chromosome, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCAAGAAAACAGCC(5' tail) CCAT(5' stem) CTC(loop) ATGG(3' stem) TTTTTTTCTGGCAAC(3' tail). Confidence: 93.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685