Motif View

Internal ID 17790003
Source Database TransTermHP TERM 4
Feature Type terminator
Name
Rho-independent transcription terminator TERM 4
Sequence CCGGTCCTTGTGACCGG
Look for more occurrences
Start 10055
End 10071
Strand -
Genomic Context
Replicon Pseudomonas fluorescens SS101 chromosome, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTGTGCATAAAAAA(5' tail) CCGGTC(5' stem) ACAAG(loop) GACCGG(3' stem) TTTTTTTATGAAGAA(3' tail). Confidence: 100. opp_overlap 10055, overlap 10030 10029

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685