Motif View

Internal ID 17788060
Source Database TransTermHP TERM 1365
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1365
Sequence TGCCCGGCTTGCCGGGCA
Look for more occurrences
Start 6091407
End 6091424
Strand -
Genomic Context
Replicon Pseudomonas synxantha BG33R chromosome, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CACCAGACAAAAAAA(5' tail) TGCCCGG(5' stem) CAAG(loop) CCGGGCA(3' stem) TGTTTTTTTCGCGTA(3' tail). Confidence: 100. opp_overlap 6091407 6091405

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685