Motif View

Internal ID 17784341
Source Database TransTermHP TERM 167
Feature Type terminator
Name
Rho-independent transcription terminator TERM 167
Sequence CGCCCGGGCGCACACCGCTCGGGCG
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Start 545373
End 545397
Strand -
Genomic Context
Replicon Pseudomonas caeni DSM 24390 H591DRAFT_scaffold00001.1_C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TTTTTGAATGTAAAA(5' tail) CGCCCGAGCG(5' stem) GTGTG(loop) CGCCCGGGCG(3' stem) TCGGGCTTACCGAGT(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685