Motif View

Internal ID 17784037
Source Database TransTermHP TERM 89
Feature Type terminator
Name
Rho-independent transcription terminator TERM 89
Sequence TGCCCGGCTTGCCGGGCA
Look for more occurrences
Start 283509
End 283526
Strand +
Genomic Context
Replicon Pseudomonas sp. URIL14HWK12:I4 H025DRAFT_scaffold00001.1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GACGCGGTAAAAACT(5' tail) TGCCCGG(5' stem) CTTG(loop) CCGGGCA(3' stem) TTTTTTTGCCAGATT(3' tail). Confidence: 100. opp_overlap 283508 283507 283509

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685