Motif View

Internal ID 17781186
Source Database TransTermHP TERM 11
Feature Type terminator
Name
Rho-independent transcription terminator TERM 11
Sequence GCCCCGCCCTGTGCGGGGC
Look for more occurrences
Start 23071
End 23089
Strand +
Genomic Context
Replicon Pseudomonas thermotolerans DSM 14292 H165DRAFT_scaffold00015.15, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGGTAATCGGAAAA(5' tail) GCCCCGC(5' stem) CCTGT(loop) GCGGGGC(3' stem) TTTTTCTTGGTAACG(3' tail). Confidence: 100. opp_overlap 23071, overlap 23065

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685