Motif View

Internal ID 17778427
Source Database TransTermHP TERM 74
Feature Type terminator
Name
Rho-independent transcription terminator TERM 74
Sequence CGCCGGGCATTTGCCCGGCG
Look for more occurrences
Start 216136
End 216155
Strand +
Genomic Context
Replicon Pseudomonas resinovorans DSM 21078 G559DRAFT_scaffold00004.4_C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGCGCAATGAAAAA(5' tail) CGCCGGGC(5' stem) ATTT(loop) GCCCGGCG(3' stem) TTTTCGTTTCCAGCT(3' tail). Confidence: 100. opp_overlap 216136, overlap 216131

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685