Motif View

Internal ID 17778320
Source Database TransTermHP TERM 52
Feature Type terminator
Name
Rho-independent transcription terminator TERM 52
Sequence GCCCGCCATTGCGCGGGC
Look for more occurrences
Start 141064
End 141081
Strand -
Genomic Context
Replicon Pseudomonas resinovorans DSM 21078 G559DRAFT_scaffold00002.2_C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGCACGCATGAAAAA(5' tail) GCCCGC(5' stem) GCAATG(loop) GCGGGC(3' stem) TCTTTCGACGGGTGC(3' tail). Confidence: 100. opp_overlap 141062 141064

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685