Motif View

Internal ID 17777899
Source Database TransTermHP TERM 36
Feature Type terminator
Name
Rho-independent transcription terminator TERM 36
Sequence TGCCCGGCTTGCCGGGCA
Look for more occurrences
Start 169231
End 169248
Strand +
Genomic Context
Replicon Pseudomonas parafulva DSM 17004 H619DRAFT_scaffold00009.9_C, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCCCTGTAAAAACT(5' tail) TGCCCGG(5' stem) CTTG(loop) CCGGGCA(3' stem) TTTTTTTGCCAATTT(3' tail). Confidence: 100. opp_overlap 169230 169229 169231

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685