Motif View

Internal ID 17768498
Source Database TransTermHP TERM 36
Feature Type terminator
Name
Rho-independent transcription terminator TERM 36
Sequence CGGTGCTCACGGGGCACCG
Look for more occurrences
Start 232635
End 232653
Strand +
Genomic Context
Replicon Pseudomonas sp. CF149 soap_scaffs_149.Contig31, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCAGCCATAAAAAAA(5' tail) CGGTGCTC(5' stem) ACG(loop) GGGCACCG(3' stem) TTTTTTCTTCAGCTT(3' tail). Confidence: 100. opp_overlap 232635

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685