Motif View

Internal ID 17768480
Source Database TransTermHP TERM 13
Feature Type terminator
Name
Rho-independent transcription terminator TERM 13
Sequence GCCCTGCCCTTGCAGGGC
Look for more occurrences
Start 68762
End 68779
Strand +
Genomic Context
Replicon Pseudomonas sp. CF149 soap_scaffs_149.Contig31, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCATCAGTGACAACA(5' tail) GCCCTGC(5' stem) CCTT(loop) GCAGGGC(3' stem) TTTTTTTGTACCGCT(3' tail). Confidence: 100. opp_overlap 68760 68762

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685