Motif View

Internal ID 17766612
Source Database TransTermHP TERM 29
Feature Type terminator
Name
Rho-independent transcription terminator TERM 29
Sequence GCCCGCCCGCATTCGTGCTGGCGGGC
Look for more occurrences
Start 57828
End 57853
Strand -
Genomic Context
Replicon Pseudomonas sp. P818 P818-scaffold13, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACCAGGCAACAAAAA(5' tail) GCCCGCCAGCA(5' stem) CGAA(loop) TGCGGGCGGGC(3' stem) TCTTTCGAACCGTGA(3' tail). Confidence: 100. opp_overlap 57828 57826

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685