Motif View

Internal ID 17763551
Source Database TransTermHP TERM 34
Feature Type terminator
Name
Rho-independent transcription terminator TERM 34
Sequence GCCCTGCTCAAGAGCAGGGC
Look for more occurrences
Start 184100
End 184119
Strand -
Genomic Context
Replicon Pseudomonas syringae BRIP39023 genomic scaffold scaffold17, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTGCGCAAACGCAAA(5' tail) GCCCTGCT(5' stem) CTTG(loop) AGCAGGGC(3' stem) TTTTTTTGTCTCCGA(3' tail). Confidence: 93. opp_overlap 184100

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685