Motif View

Internal ID 17762660
Source Database TransTermHP TERM 53
Feature Type terminator
Name
Rho-independent transcription terminator TERM 53
Sequence GCCGACCTTGAAGGTCGGC
Look for more occurrences
Start 208356
End 208374
Strand -
Genomic Context
Replicon Pseudomonas stutzeri T13 contig000016, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TGTAAAAGCAAAAAA(5' tail) GCCGACCT(5' stem) TCA(loop) AGGTCGGC(3' stem) TTTTTTATGCCCGCG(3' tail). Confidence: 100. opp_overlap 208356

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685