Motif View

Internal ID 17758991
Source Database TransTermHP TERM 105
Feature Type terminator
Name
Rho-independent transcription terminator TERM 105
Sequence GGGCCCGCAAGGGGGCCC
Look for more occurrences
Start 355331
End 355348
Strand -
Genomic Context
Replicon Pseudomonas sp. S9 Contig5, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTGTAGTCTAGAAAA(5' tail) GGGCCC(5' stem) CCTTGC(loop) GGGCCC(3' stem) TTTTTTTTGCGCTGT(3' tail). Confidence: 90. opp_overlap 355331

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685