Motif View

Internal ID 17758516
Source Database TransTermHP TERM 193
Feature Type terminator
Name
Rho-independent transcription terminator TERM 193
Sequence GCCGGCCCATTATGGGCCGGC
Look for more occurrences
Start 586195
End 586215
Strand -
Genomic Context
Replicon Pseudomonas sp. S9 Contig1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CATCGACAAAAAAAA(5' tail) GCCGGCCCA(5' stem) TAA(loop) TGGGCCGGC(3' stem) TTTCTTTAGCCTGAA(3' tail). Confidence: 100. opp_overlap 586195, overlap 586179

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685