Motif View

Internal ID 17757606
Source Database TransTermHP TERM 44
Feature Type terminator
Name
Rho-independent transcription terminator TERM 44
Sequence CCCCGCGCTTGCCGCGGGG
Look for more occurrences
Start 153247
End 153265
Strand -
Genomic Context
Replicon Pseudomonas taeanensis MS-3 contig_06, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGGACATAAAAAAA(5' tail) CCCCGCG(5' stem) GCAAG(loop) CGCGGGG(3' stem) TTTTTTAGTACAGCT(3' tail). Confidence: 100. opp_overlap 153247

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685