Motif View

Internal ID 17756736
Source Database TransTermHP TERM 7
Feature Type terminator
Name
Rho-independent transcription terminator TERM 7
Sequence CACCCCGCCCCGGCGGGGTG
Look for more occurrences
Start 50704
End 50723
Strand -
Genomic Context
Replicon Pseudomonas pelagia CL-AP6 111.KCCM90073.1_11, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGACACAAACAAAA(5' tail) CACCCCGC(5' stem) CGGG(loop) GCGGGGTG(3' stem) TGTTGGAGCAGCAAT(3' tail). Confidence: 100. opp_overlap 50704 50706, overlap 50699

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685