Motif View

Internal ID 17756714
Source Database TransTermHP TERM 77
Feature Type terminator
Name
Rho-independent transcription terminator TERM 77
Sequence CCCGGCCGAAGCCGGG
Look for more occurrences
Start 432329
End 432344
Strand -
Genomic Context
Replicon Pseudomonas pelagia CL-AP6 111.KCCM90073.1_9, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTTAGCTTAAAAAA(5' tail) CCCGGC(5' stem) TTCG(loop) GCCGGG(3' stem) TTTTTTATGTCTGCT(3' tail). Confidence: 100. opp_overlap 432322 432329

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685