Motif View

Internal ID 17756425
Source Database TransTermHP TERM 68
Feature Type terminator
Name
Rho-independent transcription terminator TERM 68
Sequence GCCCCGCTCTCGATGCACGAGAGCGGGGC
Look for more occurrences
Start 243369
End 243397
Strand -
Genomic Context
Replicon Pseudomonas sp. PAMC 25886 ctg7180000004560, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TACAGCCACAAAAAA(5' tail) GCCCCGCTCTCG(5' stem) TGCAT(loop) CGAGAGCGGGGC(3' stem) TTTTTATTGGACTAG(3' tail). Confidence: 100. opp_overlap 243369

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685