Motif View

Internal ID 17756108
Source Database TransTermHP TERM 3
Feature Type terminator
Name
Rho-independent transcription terminator TERM 3
Sequence GACCCCGCTTTTTAGGCGGGGTC
Look for more occurrences
Start 7156
End 7178
Strand -
Genomic Context
Replicon Pseudomonas sp. PAMC 25886 ctg7180000004522, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACCGCACACAAAAAA(5' tail) GACCCCGCCT(5' stem) AAA(loop) AAGCGGGGTC(3' stem) TTTTTTCGTGCGGCC(3' tail). Confidence: 100. opp_overlap 7156

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685