Motif View

Internal ID 17755959
Source Database TransTermHP TERM 6
Feature Type terminator
Name
Rho-independent transcription terminator TERM 6
Sequence GCCCTGACTTGATCAGGGC
Look for more occurrences
Start 19602
End 19620
Strand +
Genomic Context
Replicon Pseudomonas sp. PAMC 25886 ctg7180000004510, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TAAGCTAACTAAAAA(5' tail) GCCCTGA(5' stem) CTTGA(loop) TCAGGGC(3' stem) TTTTTTGTATTTGCA(3' tail). Confidence: 100. opp_overlap 19602, overlap 19595 19593

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685