Motif View

Internal ID 17755908
Source Database TransTermHP TERM 14
Feature Type terminator
Name
Rho-independent transcription terminator TERM 14
Sequence CCCGCACCAGGCGGG
Look for more occurrences
Start 38353
End 38367
Strand +
Genomic Context
Replicon Pseudomonas sp. PAMC 25886 ctg7180000004501, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CCAGACAACAAAAAA(5' tail) CCCGC(5' stem) ACCAG(loop) GCGGG(3' stem) TTTTTTGTGTGTTTC(3' tail). Confidence: 100. opp_overlap 38346 38353, overlap 38346 38343

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685