Motif View

Internal ID 17753083
Source Database TransTermHP TERM 49
Feature Type terminator
Name
Rho-independent transcription terminator TERM 49
Sequence GCGCCAGGCTGTCGCCTGGCGG
Look for more occurrences
Start 121938
End 121959
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa MRW44.1 contig00008, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AATATACGAGAAAAA(5' tail) CCGCCAGGC(5' stem) GACA(loop) GCCTGGCGC(3' stem) CTCACATCTGTTGCA(3' tail). Confidence: 100. overlap 121939

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685