Motif View

Internal ID 17745258
Source Database TransTermHP TERM 22
Feature Type terminator
Name
Rho-independent transcription terminator TERM 22
Sequence CTGGCTTGCCAG
Look for more occurrences
Start 68846
End 68857
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa PADK2_CF510 contig055, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCTTCTCAGAAAAGT(5' tail) CTGG(5' stem) CTTG(loop) CCAG(3' stem) TTTTCTTTCTTTCTC(3' tail). Confidence: 90. opp_overlap 68846 68845

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685