Motif View

Internal ID 17743150
Source Database TransTermHP TERM 496
Feature Type terminator
Name
Rho-independent transcription terminator TERM 496
Sequence GGCGCCCACGGGCGCC
Look for more occurrences
Start 2025919
End 2025934
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa 19BR 19BR chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAGGAAACGAAAAAA(5' tail) GGCGCC(5' stem) CGTG(loop) GGCGCC(3' stem) TTTCGTCGTATGGAA(3' tail). Confidence: 100. opp_overlap 2025919, overlap 2025911

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685