Motif View

Internal ID 17742834
Source Database TransTermHP TERM 3
Feature Type terminator
Name
Rho-independent transcription terminator TERM 3
Sequence GCCCCGCCATAGCGGGGC
Look for more occurrences
Start 13972
End 13989
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa 19BR 19BR chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCGTGAAAACAAGAA(5' tail) GCCCCGC(5' stem) TATG(loop) GCGGGGC(3' stem) TTCTTTTATCGAATC(3' tail). Confidence: 93. opp_overlap 13969, overlap 13969

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685