Motif View

Internal ID 17742183
Source Database TransTermHP TERM 644
Feature Type terminator
Name
Rho-independent transcription terminator TERM 644
Sequence GCCCGGCCAGCGAGCCGGGC
Look for more occurrences
Start 2884547
End 2884566
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa 213BR 213BR chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCGCCCACGAAAAA(5' tail) GCCCGGC(5' stem) TCGCTG(loop) GCCGGGC(3' stem) TCTTTCGCTGCGGGT(3' tail). Confidence: 100. opp_overlap 2884547 2884545, overlap 2884531 2884532

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685