Motif View

Internal ID 17741781
Source Database TransTermHP TERM 8
Feature Type terminator
Name
Rho-independent transcription terminator TERM 8
Sequence GGGCGCAACGGCCGTGACCGTTGCGCCC
Look for more occurrences
Start 23324
End 23351
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa 213BR 213BR chromosome, whole genome shotgun sequence, complete genome.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GGCAATCTGGAGGAA(5' tail) GGGCGCAACGG(5' stem) TCACGG(loop) CCGTTGCGCCC(3' stem) TTCTTCATTCAGGAG(3' tail). Confidence: 90. opp_overlap 23321 23324

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685