Motif View

Internal ID 17741336
Source Database TransTermHP TERM 1019
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1019
Sequence CAAGCCCCGCAATTGGCGGGGCTTCG
Look for more occurrences
Start 4266431
End 4266456
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa 9BR 9BRScaffold1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCCCACACCGCAAG(5' tail) C-AAGCCCCGC(5' stem) AATTG(loop) GCGGGGCTTCG(3' stem) TTTTTCCGGGGGCCA(3' tail). Confidence: 95. gap 1, opp_overlap 4266434, overlap 4266434

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685