Motif View

Internal ID 17741212
Source Database TransTermHP TERM 823
Feature Type terminator
Name
Rho-independent transcription terminator TERM 823
Sequence CCGGTCCCTCGGGGCCGG
Look for more occurrences
Start 3564706
End 3564723
Strand +
Genomic Context
Replicon Pseudomonas aeruginosa 9BR 9BRScaffold1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ACGACCTGTTGAAAA(5' tail) CCGGTCC(5' stem) CTCG(loop) GGGCCGG(3' stem) TTTTTTTATGCCTGC(3' tail). Confidence: 100. opp_overlap 3564706, overlap 3564718

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685