Motif View

Internal ID 17741128
Source Database TransTermHP TERM 680
Feature Type terminator
Name
Rho-independent transcription terminator TERM 680
Sequence GCCGCCGGCCACAGGGCCGGCGGC
Look for more occurrences
Start 3029080
End 3029103
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa 9BR 9BRScaffold1, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCTAGTCAGTGAGAA(5' tail) GCCGCCGGCC(5' stem) CTGT(loop) GGCCGGCGGC(3' stem) GGAAGCATTCGGGGC(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685