Motif View

Internal ID 17740664
Source Database TransTermHP TERM 1616
Feature Type terminator
Name
Rho-independent transcription terminator TERM 1616
Sequence TTGGTCACCAGCGGTTACCGA
Look for more occurrences
Start 6008735
End 6008755
Strand -
Genomic Context
Replicon Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GTCGCCGTAAAAAAA(5' tail) TCGGTAACC(5' stem) GCT(loop) GGTGACCAA(3' stem) CGGTTTACGCCCCTT(3' tail). Confidence: 95. opp_overlap 6008742, overlap 6008736

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685