Motif View

Internal ID 17740102
Source Database TransTermHP TERM 777
Feature Type terminator
Name
Rho-independent transcription terminator TERM 777
Sequence CCCATGATCGCTCATGGG
Look for more occurrences
Start 2938685
End 2938702
Strand -
Genomic Context
Replicon Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GCTGAAACGAAAAAA(5' tail) CCCATGA(5' stem) GCGA(loop) TCATGGG(3' stem) TTTTTTTATGCCTGA(3' tail). Confidence: 100. opp_overlap 2938685

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685