Motif View

Internal ID 17739883
Source Database TransTermHP TERM 445
Feature Type terminator
Name
Rho-independent transcription terminator TERM 445
Sequence GGTCAGAGCCTCACGGCTCTGGCC
Look for more occurrences
Start 1510120
End 1510143
Strand +
Genomic Context
Replicon Pseudomonas fluorescens R124 chromosome, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGAAAGTTTTTTATA(5' tail) GGTCAGAGCC(5' stem) TCAC(loop) GGCTCTGGCC(3' stem) TTGTCTGTTGTTCCC(3' tail). Confidence: 95.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685