Motif View

Internal ID 17737231
Source Database TransTermHP TERM 12
Feature Type terminator
Name
Rho-independent transcription terminator TERM 12
Sequence GCCCCGAAAGGGGC
Look for more occurrences
Start 40445
End 40458
Strand -
Genomic Context
Replicon Pseudomonas stutzeri B1SMN1 contig00027, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AGCAGGCATGAAAAA(5' tail) GCCCC(5' stem) TTTC(loop) GGGGC(3' stem) TTTTTCTTTTTACAG(3' tail). Confidence: 100. opp_overlap 40439 40445

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685