Motif View

Internal ID 17735976
Source Database TransTermHP TERM 6
Feature Type terminator
Name
Rho-independent transcription terminator TERM 6
Sequence CGGCCAGGCAGCACCTGGCCG
Look for more occurrences
Start 25477
End 25497
Strand +
Genomic Context
Replicon Pseudomonas stutzeri NF13 contig00090, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CAGAACGTTGAACGA(5' tail) CGGCCAGG(5' stem) CAGCA(loop) CCTGGCCG(3' stem) TTTTTGCACGGGGAG(3' tail). Confidence: 100. opp_overlap 25477 25467

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685