Motif View

Internal ID 17733358
Source Database TransTermHP TERM 24
Feature Type terminator
Name
Rho-independent transcription terminator TERM 24
Sequence GGCGAGGTGCCCCGCGCCTCGCC
Look for more occurrences
Start 88002
End 88024
Strand +
Genomic Context
Replicon Pseudomonas sp. M47T1 contig04, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments GAGTAAACCTTGTGT(5' tail) GGCGAGGTGC(5' stem) CCC(loop) GCGCCTCGCC(3' stem) TTTTTCCCTCCGGAA(3' tail). Confidence: 100.

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685