Motif View

Internal ID 17732136
Source Database TransTermHP TERM 11
Feature Type terminator
Name
Rho-independent transcription terminator TERM 11
Sequence GGCGCCAATGGCGCC
Look for more occurrences
Start 59089
End 59103
Strand +
Genomic Context
Replicon Pseudomonas stutzeri MF28 contig7, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CTCAGACGAACAAAA(5' tail) GGCGCC(5' stem) AAT(loop) GGCGCC(3' stem) TTTTGCATTTGCGGT(3' tail). Confidence: 95. opp_overlap 59089 59084, overlap 59083

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685