Motif View

Internal ID 17731878
Source Database TransTermHP TERM 16
Feature Type terminator
Name
Rho-independent transcription terminator TERM 16
Sequence GCTGCTCCCTCACCGGGAGCAGC
Look for more occurrences
Start 31443
End 31465
Strand +
Genomic Context
Replicon Pseudomonas stutzeri MF28 contig25, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CATCTACCGAAGAAA(5' tail) GCTGCTCCC(5' stem) TCACC(loop) GGGAGCAGC(3' stem) TTTTTTTTTTCGTTT(3' tail). Confidence: 100. opp_overlap 31443

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685