Motif View

Internal ID 17722855
Source Database TransTermHP TERM 722
Feature Type terminator
Name
Rho-independent transcription terminator TERM 722
Sequence GGGCCTTAAAGGCCC
Look for more occurrences
Start 3493102
End 3493116
Strand +
Genomic Context
Replicon Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments AAGTGATCGAAAAAA(5' tail) GGGCCT(5' stem) TAA(loop) AGGCCC(3' stem) TTTTTTCGTTCTGGC(3' tail). Confidence: 100. opp_overlap 3493093 3493102, overlap 3493094

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685