Motif View

Internal ID 17722619
Source Database TransTermHP TERM 328
Feature Type terminator
Name
Rho-independent transcription terminator TERM 328
Sequence GGCACCCAATAAGGGTGCC
Look for more occurrences
Start 1608716
End 1608734
Strand +
Genomic Context
Replicon Pseudomonas syringae pv. syringae B64 chromosome, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments TCTACAAAACACAAA(5' tail) GGCACCC(5' stem) AATAA(loop) GGGTGCC(3' stem) TTTGTGTTTGTGGCG(3' tail). Confidence: 91. opp_overlap 1608710 1608716, overlap 1608710

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685