Motif View

Internal ID 17718105
Source Database TransTermHP TERM 25
Feature Type terminator
Name
Rho-independent transcription terminator TERM 25
Sequence GGCCGCTATTGCGGCC
Look for more occurrences
Start 51060
End 51075
Strand -
Genomic Context
Replicon Pseudomonas aeruginosa PA21_ST175 contig00016, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments CGCAATAGCGAAAAA(5' tail) GGCCGC(5' stem) AATA(loop) GCGGCC(3' stem) TTTTTTTCGTTGCGA(3' tail). Confidence: 100. opp_overlap 51060

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685