Motif View

Internal ID 17713816
Source Database TransTermHP TERM 20
Feature Type terminator
Name
Rho-independent transcription terminator TERM 20
Sequence GCCCTGCATATGCAGGGC
Look for more occurrences
Start 25618
End 25635
Strand -
Genomic Context
Replicon Pseudomonas sp. GM25 PMI24_contig_130.130, whole genome shotgun sequence.
Evidence
ECO:0000246
computational combinatorial evidence used in automatic assertion
Additional Comments ATTGTCCGAAAAAAA(5' tail) GCCCTGC(5' stem) ATAT(loop) GCAGGGC(3' stem) TTTCATGTTTGCGAG(3' tail). Confidence: 100. opp_overlap 25618

Reference

Rapid, accurate, computational discovery of Rho-independent transcription terminators illuminates their relationship to DNA uptake.
Kingsford CL, Ayanbule K, Salzberg SL
Genome Biol. 2007 ;8(2):R22
PubMed ID: 17313685